Massively Parallel Approximation Algorithms for Edit Distance and Longest Common Subsequence

String similarity measures are among the most fundamental problems in computer science. The notable examples are edit distance (ED) and longest common subsequence (LCS). These problems find their applications in various contexts such as computational biology, text processing, compiler optimization, data analysis, image analysis, etc. In this work, we revisit edit distance and longest common subsequence in the parallel settings. We present massively parallel algorithms for both problems that are optimal in the following senses:

Our result for edit distance substantially improves the massively parallel algorithm of [15] in terms of approximation factor, round complexity, number of machines, and total running time. Our unified approach to tackle both problems is to divide one of the strings into smaller blocks and try to locally predict which intervals of the other string correspond to each block in an optimal solution.

Our main technical contribution is a novel parallel algorithm for computing a set of compositions, and recursively decomposing each function into a set of smaller iterative compositions (in terms of memory needed to solve the problem). These two methods together give us a strong tool for approximating combinatorial problems. For instance, LCS can be formulated as a recursive composition of functions and therefore this tool enables us to approximate LCS within a factor 1 + ∊. Indeed, we recursively decompose the problem until we are able to compute the solution on a single machine. Since our methods are quite general, we expect this technique to find its applications in other combinatorial problems as well.